rCAD and CATUI Documentation

Video Tutorials

• CATUI 3.0 Welcome Tour (16:34, WMV) or on YouTube: http://www.youtube.com/GutellLab.

rCAD and rCAD Utilities

• Setup/Notes
• Installation
• rCAD Creator Utility
• rCAD Alignment Loader Utility
• rCAD Taxonomy Updater Utility

CATUI 3.51

• Documentation is now in a compiled help file, CATUI.chm and can be downloaded separately or accessed from within the CATUI application with the F1 key.

CATUI 3.0

• Installation
• Documentation is now in a compiled help file, CATUI.chm and can be downloaded separately or accessed from within the CATUI application with the F1 key.
• Note: There appears to be an issue with the way the built in unzip tool in Windows 7 is handling the CATUI3.0.zip file. Use WinZip or 7zip to extract.

CATUI 2.0

• Installation
  • Program Layout
• Main Window
  • Windowing Framework and Data Source Management
  • Workspaces
• Data Sources
  • File-Based Sequence Alignments
  • rCAD-Based Sequence Alignments
  • 2-D Structure Diagrams
• Alignment Viewer
  • Quick Reference - Key commands
  • Views
  • Scrolling, Input and Row Locking
  • Grouping by Evolutionary Relationships/Taxonomy
  • Reference Sequences
• Secondary Structure Viewer
  • 2-D Visualization
  • Circle Visualization
  • Nested Visualization
• 3D Structure Viewer