RNA Comparative Analysis Software Tools 2.0

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Downloads: 521
Change Set: 46535
Released: Feb 16, 2010
Updated: Feb 22, 2010 by kjdoshi
Dev status: Stable Help Icon

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Release Notes

RNA Comparative Analysis Software Tools Version 2.0

Note: The RNA Comparative Analysis Software Tools are provided as is, without any warranty.

Note: There appears to be a bug with the way the built in unzip tool in Windows 7 is handling the CATUI3.0.zip file. Use WinZip or 7zip to extract.

The RNA Comparative Analysis Software tools is an advanced software infrastructure for the high-throughput Comparative Analysis of RNA sequences and structure.

The RNA Comparative Analysis Software tools consist of two major components:

RNA Comparative Analysis Database (rCAD) Comparative Analysis Toolkit User Interface (CATUI)
  • Current Version: CATUI 3.0.
  • Can be installed standalone.

Minimum Installation Prerequisites:
  • Microsoft Windows XP SP3, Vista, Windows 7 or Windows Server
  • .NET Framework 3.5, SP1 and .NET Framework 4.0
  • rCAD: SQL Server 2008 Express Edition
  • 4GB Memory

CATUI Version 3.00.00 (Back to Top)

  • Note: The CATUI is not currently functional for sequence alignment editing work, but is functional for sequence alignment visualization.
  • CATUI Installation instructions available here.
  • CATUI 3.0 Documentation is integrated in the application, access with the F1 key.
  • CATUI 3.0 Discussion Thread is available here.

CATUI 3.00 Data Sets:
Design Highlights over CATUI 2.0
  • More consistent Windows Look and Feel
    • Keyboard Shortcuts, Menus and Toolbar
  • CATUI Alignment Browser
    • Custom WPF Control with significant performance enhancements over CATUI 2.0
    • Alignment Viewer Customization and Profiles
    • Taxonomy Browser
    • Birds Eye Viewer
    • Split Screen View
    • Integrated Documentation
    • Migration to .NET 4.0

rCAD Reference Implementation Version 1.00.00 (Back to Top)

  • The rCAD Utilities are provided as 32bit and 64bit binaries.
  • The rCAD Reference Implementation is the rCAD database and a set of software utilities (rCAD Utilities) for creating and maintaining rCAD database instances.
  • The SQL queries for the rCAD database schema are within the documentation attached to this release.
  • rCAD Reference Implementation Discussion Thread is available here

rCAD Datasets:
Installing the Reference Implementation:
rCAD Utilities:

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